openPMD-api
HDF5IOHandlerImpl.hpp
1 /* Copyright 2017-2020 Fabian Koller
2  *
3  * This file is part of openPMD-api.
4  *
5  * openPMD-api is free software: you can redistribute it and/or modify
6  * it under the terms of of either the GNU General Public License or
7  * the GNU Lesser General Public License as published by
8  * the Free Software Foundation, either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * openPMD-api is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License and the GNU Lesser General Public License
15  * for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * and the GNU Lesser General Public License along with openPMD-api.
19  * If not, see <http://www.gnu.org/licenses/>.
20  */
21 #pragma once
22 
23 #include "openPMD/config.hpp"
24 #if openPMD_HAVE_HDF5
25 # include "openPMD/IO/AbstractIOHandlerImpl.hpp"
26 
27 # include "openPMD/auxiliary/Option.hpp"
28 
29 # include <hdf5.h>
30 # include <unordered_map>
31 # include <unordered_set>
32 #endif
33 
34 
35 namespace openPMD
36 {
37 #if openPMD_HAVE_HDF5
39  {
40  public:
42  ~HDF5IOHandlerImpl() override;
43 
49  void openFile(Writable*, Parameter< Operation::OPEN_FILE > const&) override;
51  void openPath(Writable*, Parameter< Operation::OPEN_PATH > const&) override;
64 
65  std::unordered_map< Writable*, std::string > m_fileNames;
66  std::unordered_map< std::string, hid_t > m_fileNamesWithID;
67 
68  std::unordered_set< hid_t > m_openFileIDs;
69 
70  hid_t m_datasetTransferProperty;
71  hid_t m_fileAccessProperty;
72 
73  // h5py compatible types for bool and complex
74  hid_t m_H5T_BOOL_ENUM;
75  hid_t m_H5T_CFLOAT;
76  hid_t m_H5T_CDOUBLE;
77  hid_t m_H5T_CLONG_DOUBLE;
78 
79  private:
80  struct File
81  {
82  std::string name;
83  hid_t id;
84  };
86  }; // HDF5IOHandlerImpl
87 #else
88  class HDF5IOHandlerImpl
89  {
90  }; // HDF5IOHandlerImpl
91 #endif
92 
93 } // openPMD
void writeAttribute(Writable *, Parameter< Operation::WRITE_ATT > const &) override
Create a single attribute and fill the value, possibly overwriting an existing attribute.
Definition: HDF5IOHandler.cpp:890
void readDataset(Writable *, Parameter< Operation::READ_DATASET > &) override
Read a chunk of data from an existing dataset.
Definition: HDF5IOHandler.cpp:1163
void extendDataset(Writable *, Parameter< Operation::EXTEND_DATASET > const &) override
Increase the extent of an existing dataset.
Definition: HDF5IOHandler.cpp:339
void createFile(Writable *, Parameter< Operation::CREATE_FILE > const &) override
Create a new file in physical storage, possibly overriding an existing file.
Definition: HDF5IOHandler.cpp:124
void deleteDataset(Writable *, Parameter< Operation::DELETE_DATASET > const &) override
Delete an existing dataset.
Definition: HDF5IOHandler.cpp:723
void readAttribute(Writable *, Parameter< Operation::READ_ATT > &) override
Read the value of an existing attribute.
Definition: HDF5IOHandler.cpp:1252
void openDataset(Writable *, Parameter< Operation::OPEN_DATASET > &) override
Open an existing dataset and determine its datatype and extent.
Definition: HDF5IOHandler.cpp:545
Interface for communicating between logical and physically persistent data.
Definition: AbstractIOHandler.hpp:68
Simple Option type based on variantSrc::variant.
Definition: Option.hpp:47
void listPaths(Writable *, Parameter< Operation::LIST_PATHS > &) override
List all paths/sub-groups inside a group, non-recursively.
Definition: HDF5IOHandler.cpp:1681
void listDatasets(Writable *, Parameter< Operation::LIST_DATASETS > &) override
List all datasets inside a group, non-recursively.
Definition: HDF5IOHandler.cpp:1715
Public definitions of openPMD-api.
Definition: Date.cpp:29
Layer to mirror structure of logical data and persistent data in file.
Definition: Writable.hpp:55
void openPath(Writable *, Parameter< Operation::OPEN_PATH > const &) override
Open all contained groups in a path, possibly recursively.
Definition: HDF5IOHandler.cpp:508
void deleteAttribute(Writable *, Parameter< Operation::DELETE_ATT > const &) override
Delete an existing attribute.
Definition: HDF5IOHandler.cpp:766
void createPath(Writable *, Parameter< Operation::CREATE_PATH > const &) override
Create all necessary groups for a path, possibly recursively.
Definition: HDF5IOHandler.cpp:162
void closeFile(Writable *, Parameter< Operation::CLOSE_FILE > const &) override
Close the file corresponding with the writable and release file handles.
Definition: HDF5IOHandler.cpp:487
void createDataset(Writable *, Parameter< Operation::CREATE_DATASET > const &) override
Create a new dataset of given type, extent and storage properties.
Definition: HDF5IOHandler.cpp:225
void availableChunks(Writable *, Parameter< Operation::AVAILABLE_CHUNKS > &) override
Report chunks that are available for loading from the dataset represented by this writable...
Definition: HDF5IOHandler.cpp:382
void deletePath(Writable *, Parameter< Operation::DELETE_PATH > const &) override
Delete all objects within an existing path.
Definition: HDF5IOHandler.cpp:680
void deleteFile(Writable *, Parameter< Operation::DELETE_FILE > const &) override
Delete an existing file from physical storage.
Definition: HDF5IOHandler.cpp:649
void writeDataset(Writable *, Parameter< Operation::WRITE_DATASET > const &) override
Write a chunk of data into an existing dataset.
Definition: HDF5IOHandler.cpp:794
Definition: HDF5IOHandlerImpl.hpp:38
Definition: AbstractIOHandlerImpl.hpp:35
void openFile(Writable *, Parameter< Operation::OPEN_FILE > const &) override
Open an existing file assuming it conforms to openPMD.
Definition: HDF5IOHandler.cpp:443
void listAttributes(Writable *, Parameter< Operation::LIST_ATTS > &) override
List all attributes associated with an object.
Definition: HDF5IOHandler.cpp:1748